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R Resources
R リソース
Important R
resources for biological data analysis
Biological and other data analysis skills in R
require to understand the basics of the subject, learn coding and how to use RStudio
. It is also recommended to take advantage of the extensive R
ecosystem and use a variety of R
packages to help us with the data analysis. Please see the resources below.
R
& RStudio
have extensive support including community and research fora, AI tools, etc. If you encounter any issues with installing R
packages, have programming or analysis problems, please explore them. There are also various books and tutorials that can be used for learning R
.
- Community support
- AI Chat
- Research fora
- Books & Tutorials (Free)
R
/Rstudio
Set-upR
for Excel UsersRStudio
Education- Posit Cheatsheets
R
for Data Science (2nd Edition / free PDF)R
for Data Science (1st Edition / paper copy) available in English /Japanese / Chinese at Bioinformatics Laboratory (P404)
There are over 20,000 actively developed R
packages that help performing a variety of analysis, such as data import, manipulation, visualization and more. Below is a short list of useful R
package.
- Collection of Data Science Packages
- Data Import & Writing
readxl
readr
- Data Manipulation (wrangling)
dplyr
tidyr
- Data Visualization
ggpubr
ggplot2
- Data Exploration
- Public Database API
- Differential Gene Expression
- Gene Set Enrichment Analysis
- Single Cell Data Analysis
- Heatmaps
- Principal Component Analysis (PCA)
- Web Application Creation
- Classification and Regression Training (ML)
- Survival Analysis
To learn more about the packages, type and execute the following code in your RStudio
console:
# ??package_name
# example, to know more about readr
??readr