Genomic

Store and manage genetic information, e.g. DNA sequences, gene annotations, and variants

• Database of Genomic Structural Variation (dbVar) and Database of Genotypes and Phenotypes(dbGaP)
• Gene , GenBank , and RefSeq
• Gene Expression Omnibus (GEO) Datasets
• Genome Data Viewer (GDV)
• AlzBiomarker (Alzheimer’s-related biomarkers)
• International Genome Sample Resource (IGSR)
• Cancer Single-cell Expression Map (CancerSCEM)

Clinical

Store and manage data related to patients’ medical history, diagnoses, treatments, and outcomes

• Surveillance, Epidemiology, and End Results (SEER)

• National Health and Nutrition Examination Survey (NHANES)

• The Cancer Proteome Atlas (TCPA)

• The Cancer Genome Atlas (TCGA)

• Medical Information Mart for Intensive Care (MIMIC)

• AlzRisk (Alzheimer’s-related risk factors)

Oncology-related tools

• GDC Data Portal (genomic & clinical)

• cBioPortal (multi-study)

• UCSC Xena (genomic & clinical)

• CancerSCEM analyze modules (single-cell level)

• TANRIC (lncRNA-focused)

Other tools

• miEAA (miRNA-focused)

• RCoV19 (covid-related)

• RNAseq analysis on the Web (from raw data (fastQ) to QC all the way to pathway analysis)

• WebGestalt (web-based gene set analysis tool; pathway analysis, ORA, etc)

• UCSC Genome Browser

• Ensembl Genome Browser

• ZENBU全部

• Integrative Genomics Viewer (IGV)